|
Amesos2 - Direct Sparse Solver Interfaces
Version of the Day
|
00001 // @HEADER 00002 // 00003 // *********************************************************************** 00004 // 00005 // Amesos2: Templated Direct Sparse Solver Package 00006 // Copyright 2011 Sandia Corporation 00007 // 00008 // Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, 00009 // the U.S. Government retains certain rights in this software. 00010 // 00011 // Redistribution and use in source and binary forms, with or without 00012 // modification, are permitted provided that the following conditions are 00013 // met: 00014 // 00015 // 1. Redistributions of source code must retain the above copyright 00016 // notice, this list of conditions and the following disclaimer. 00017 // 00018 // 2. Redistributions in binary form must reproduce the above copyright 00019 // notice, this list of conditions and the following disclaimer in the 00020 // documentation and/or other materials provided with the distribution. 00021 // 00022 // 3. Neither the name of the Corporation nor the names of the 00023 // contributors may be used to endorse or promote products derived from 00024 // this software without specific prior written permission. 00025 // 00026 // THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY 00027 // EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00028 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 00029 // PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE 00030 // CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 00031 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 00032 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 00033 // PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 00034 // LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 00035 // NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 00036 // SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00037 // 00038 // Questions? Contact Michael A. Heroux (maherou@sandia.gov) 00039 // 00040 // *********************************************************************** 00041 // 00042 // @HEADER 00043 00052 #ifndef AMESOS2_SUPERLUDIST_DEF_HPP 00053 #define AMESOS2_SUPERLUDIST_DEF_HPP 00054 00055 #include <Teuchos_Tuple.hpp> 00056 #include <Teuchos_StandardParameterEntryValidators.hpp> 00057 #include <Teuchos_DefaultMpiComm.hpp> 00058 00059 #include "Amesos2_SolverCore_def.hpp" 00060 #include "Amesos2_Superludist_TypeMap.hpp" 00061 #include "Amesos2_Util.hpp" 00062 00063 00064 namespace Amesos2 { 00065 00066 00067 template <class Matrix, class Vector> 00068 Superludist<Matrix,Vector>::Superludist(Teuchos::RCP<const Matrix> A, 00069 Teuchos::RCP<Vector> X, 00070 Teuchos::RCP<const Vector> B) 00071 : SolverCore<Amesos2::Superludist,Matrix,Vector>(A, X, B) 00072 , nzvals_() // initialization to empty arrays 00073 , colind_() 00074 , rowptr_() 00075 , bvals_() 00076 , xvals_() 00077 , in_grid_(false) 00078 { 00080 // Set up the SuperLU_DIST processor grid // 00082 00083 int nprocs = this->getComm()->getSize(); 00084 SLUD::int_t nprow, npcol; 00085 get_default_grid_size(nprocs, nprow, npcol); 00086 data_.mat_comm = dynamic_cast<const Teuchos::MpiComm<int>* >(this->matrixA_->getComm().getRawPtr())->getRawMpiComm()->operator()(); 00087 SLUD::superlu_gridinit(data_.mat_comm, nprow, npcol, &(data_.grid)); 00088 00090 // Set Some default parameters. // 00091 // // 00092 // Must do this after grid has been created in // 00093 // case user specifies the nprow and npcol parameters // 00095 Teuchos::RCP<Teuchos::ParameterList> default_params 00096 = Teuchos::parameterList( *(this->getValidParameters()) ); 00097 this->setParameters(default_params); 00098 00099 // Set some internal options 00100 data_.options.Fact = SLUD::DOFACT; 00101 data_.equed = SLUD::NOEQUIL; // No equilibration has yet been performed 00102 data_.options.SolveInitialized = SLUD::NO; 00103 data_.options.RefineInitialized = SLUD::NO; 00104 data_.rowequ = false; 00105 data_.colequ = false; 00106 data_.perm_r.resize(this->globalNumRows_); 00107 data_.perm_c.resize(this->globalNumCols_); 00108 00110 // Set up a communicator for the parallel column ordering and // 00111 // parallel symbolic factorization. // 00113 data_.symb_comm = MPI_COMM_NULL; 00114 int color = MPI_UNDEFINED; 00115 int my_rank = this->rank_; 00116 00117 /* domains is the next power of 2 less than nprow*npcol. This 00118 * value will be used for creating an MPI communicator for the 00119 * pre-ordering and symbolic factorization methods. 00120 */ 00121 data_.domains = (int) ( pow(2.0, floor(log10((double)nprow*npcol)/log10(2.0))) ); 00122 00123 if( this->rank_ < data_.domains ) color = 0; 00124 MPI_Comm_split (data_.mat_comm, color, my_rank, &(data_.symb_comm)); 00125 00127 // Set up a row map that maps to only processors that are in the // 00128 // SuperLU processor grid. This will be used for redistributing A. // 00130 00131 int my_weight = 0; 00132 if( this->rank_ < nprow * npcol ){ 00133 in_grid_ = true; my_weight = 1; // I am in the grid, and I get some of the matrix rows 00134 } 00135 // TODO: might only need to initialize if parallel symbolic factorization is requested. 00136 superlu_rowmap_ 00137 = Tpetra::createWeightedContigMapWithNode<local_ordinal_type, 00138 global_ordinal_type, 00139 node_type>(my_weight, 00140 this->globalNumRows_, 00141 this->getComm(), 00142 Kokkos::DefaultNode::getDefaultNode()); 00143 // TODO: the node above should technically come from the matrix 00144 // itself. Might need to add a getNode method to the matrix 00145 // adapter. 00146 00148 // Do some other initialization // 00150 00151 data_.A.Store = NULL; 00152 function_map::LUstructInit(this->globalNumRows_, this->globalNumCols_, &(data_.lu)); 00153 SLUD::PStatInit(&(data_.stat)); 00154 // We do not use ScalePermstructInit because we will use our own 00155 // arrays for storing perm_r and perm_c 00156 data_.scale_perm.perm_r = data_.perm_r.getRawPtr(); 00157 data_.scale_perm.perm_c = data_.perm_c.getRawPtr(); 00158 } 00159 00160 00161 template <class Matrix, class Vector> 00162 Superludist<Matrix,Vector>::~Superludist( ) 00163 { 00164 /* Free SuperLU_DIST data_types 00165 * - Matrices 00166 * - Vectors 00167 * - Stat object 00168 * - ScalePerm, LUstruct, grid, and solve objects 00169 * 00170 * Note: the function definitions are the same regardless whether 00171 * complex or real, so we arbitrarily use the D namespace 00172 */ 00173 if ( this->status_.getNumPreOrder() > 0 ){ 00174 free( data_.sizes ); 00175 free( data_.fstVtxSep ); 00176 } 00177 00178 // Cleanup old matrix store memory if it's non-NULL. Our 00179 // Teuchos::Array's will destroy rowind, colptr, and nzval for us 00180 if( data_.A.Store != NULL ){ 00181 SLUD::Destroy_SuperMatrix_Store_dist( &(data_.A) ); 00182 } 00183 00184 // LU data is initialized in numericFactorization_impl() 00185 if ( this->status_.getNumNumericFact() > 0 ){ 00186 function_map::Destroy_LU(this->globalNumRows_, &(data_.grid), &(data_.lu)); 00187 } 00188 function_map::LUstructFree(&(data_.lu)); 00189 00190 // If a symbolic factorization is ever performed without a 00191 // follow-up numericfactorization, there are some arrays in the 00192 // Pslu_freeable struct which will never be free'd by 00193 // SuperLU_DIST. 00194 if ( this->status_.symbolicFactorizationDone() && 00195 !this->status_.numericFactorizationDone() ){ 00196 if ( data_.pslu_freeable.xlsub != NULL ){ 00197 free( data_.pslu_freeable.xlsub ); 00198 free( data_.pslu_freeable.lsub ); 00199 } 00200 if ( data_.pslu_freeable.xusub != NULL ){ 00201 free( data_.pslu_freeable.xusub ); 00202 free( data_.pslu_freeable.usub ); 00203 } 00204 if ( data_.pslu_freeable.supno_loc != NULL ){ 00205 free( data_.pslu_freeable.supno_loc ); 00206 free( data_.pslu_freeable.xsup_beg_loc ); 00207 free( data_.pslu_freeable.xsup_end_loc ); 00208 } 00209 free( data_.pslu_freeable.globToLoc ); 00210 } 00211 00212 SLUD::PStatFree( &(data_.stat) ) ; 00213 00214 // Teuchos::Arrays will free R, C, perm_r, and perm_c 00215 // SLUD::D::ScalePermstructFree(&(data_.scale_perm)); 00216 00217 if ( data_.options.SolveInitialized == SLUD::YES ) 00218 function_map::SolveFinalize(&(data_.options), &(data_.solve_struct)); 00219 00220 SLUD::superlu_gridexit(&(data_.grid)); // TODO: are there any 00221 // cases where grid 00222 // wouldn't be initialized? 00223 00224 if ( data_.symb_comm != MPI_COMM_NULL ) MPI_Comm_free(&(data_.symb_comm)); 00225 } 00226 00227 template<class Matrix, class Vector> 00228 int 00229 Superludist<Matrix,Vector>::preOrdering_impl() 00230 { 00231 // We will always use the NATURAL row ordering to avoid the 00232 // sequential bottleneck present when doing any other row 00233 // ordering scheme from SuperLU_DIST 00234 // 00235 // Set perm_r to be the natural ordering 00236 SLUD::int_t slu_rows_ub = Teuchos::as<SLUD::int_t>(this->globalNumRows_); 00237 for( SLUD::int_t i = 0; i < slu_rows_ub; ++i ) data_.perm_r[i] = i; 00238 00239 // loadA_impl(); // Refresh matrix values 00240 00241 if( in_grid_ ){ 00242 // If this function has been called at least once, then the 00243 // sizes, and fstVtxSep arrays were allocated in 00244 // get_perm_c_parmetis. Delete them before calling that 00245 // function again. These arrays will also be dealloc'd in the 00246 // deconstructor. 00247 if( this->status_.getNumPreOrder() > 0 ){ 00248 free( data_.sizes ); 00249 free( data_.fstVtxSep ); 00250 } 00251 #ifdef HAVE_AMESOS2_TIMERS 00252 Teuchos::TimeMonitor preOrderTime( this->timers_.preOrderTime_ ); 00253 #endif 00254 00255 float info = 0.0; 00256 info = SLUD::get_perm_c_parmetis( &(data_.A), 00257 data_.perm_r.getRawPtr(), data_.perm_c.getRawPtr(), 00258 data_.grid.nprow * data_.grid.npcol, data_.domains, 00259 &(data_.sizes), &(data_.fstVtxSep), 00260 &(data_.grid), &(data_.symb_comm) ); 00261 00262 TEUCHOS_TEST_FOR_EXCEPTION( info > 0.0, 00263 std::runtime_error, 00264 "SuperLU_DIST pre-ordering ran out of memory after allocating " 00265 << info << " bytes of memory" ); 00266 } 00267 00268 // Ordering will be applied directly before numeric factorization, 00269 // after we have a chance to get updated coefficients from the 00270 // matrix 00271 00272 return EXIT_SUCCESS; 00273 } 00274 00275 00276 00277 template <class Matrix, class Vector> 00278 int 00279 Superludist<Matrix,Vector>::symbolicFactorization_impl() 00280 { 00281 // loadA_impl(); // Refresh matrix values 00282 00283 if( in_grid_ ){ 00284 00285 #ifdef HAVE_AMESOS2_TIMERS 00286 Teuchos::TimeMonitor symFactTime( this->timers_.symFactTime_ ); 00287 #endif 00288 00289 float info = 0.0; 00290 info = SLUD::symbfact_dist((data_.grid.nprow) * (data_.grid.npcol), 00291 data_.domains, &(data_.A), data_.perm_c.getRawPtr(), 00292 data_.perm_r.getRawPtr(), data_.sizes, 00293 data_.fstVtxSep, &(data_.pslu_freeable), 00294 &(data_.grid.comm), &(data_.symb_comm), 00295 &(data_.mem_usage)); 00296 00297 TEUCHOS_TEST_FOR_EXCEPTION( info > 0.0, 00298 std::runtime_error, 00299 "SuperLU_DIST symbolic factorization ran out of memory after" 00300 " allocating " << info << " bytes of memory" ); 00301 } 00302 same_symbolic_ = false; 00303 same_solve_struct_ = false; 00304 00305 return EXIT_SUCCESS; 00306 } 00307 00308 00309 template <class Matrix, class Vector> 00310 int 00311 Superludist<Matrix,Vector>::numericFactorization_impl(){ 00312 using Teuchos::as; 00313 00314 // loadA_impl(); // Refresh the matrix values 00315 00316 // if( data_.options.Equil == SLUD::YES ){ 00317 // // Apply the scalings computed in preOrdering 00318 // function_map::laqgs(&(data_.A), data_.R.getRawPtr(), 00319 // data_.C.getRawPtr(), data_.rowcnd, data_.colcnd, 00320 // data_.amax, &(data_.equed)); 00321 00322 // data_.rowequ = (data_.equed == SLUD::ROW) || (data_.equed == SLUD::BOTH); 00323 // data_.colequ = (data_.equed == SLUD::COL) || (data_.equed == SLUD::BOTH); 00324 // } 00325 00326 if( in_grid_ ){ 00327 // Apply the column ordering, so that AC is the column-permuted A, and compute etree 00328 size_t nnz_loc = ((SLUD::NRformat_loc*)data_.A.Store)->nnz_loc; 00329 for( size_t i = 0; i < nnz_loc; ++i ) colind_[i] = data_.perm_c[colind_[i]]; 00330 00331 // Distribute data from the symbolic factorization 00332 if( same_symbolic_ ){ 00333 // Note: with the SamePattern_SameRowPerm options, it does not 00334 // matter that the glu_freeable member has never been 00335 // initialized, because it is never accessed. It is a 00336 // placeholder arg. The real work is done in data_.lu 00337 function_map::pdistribute(SLUD::SamePattern_SameRowPerm, 00338 as<SLUD::int_t>(this->globalNumRows_), // aka "n" 00339 &(data_.A), &(data_.scale_perm), 00340 &(data_.glu_freeable), &(data_.lu), 00341 &(data_.grid)); 00342 } else { 00343 function_map::dist_psymbtonum(SLUD::DOFACT, 00344 as<SLUD::int_t>(this->globalNumRows_), // aka "n" 00345 &(data_.A), &(data_.scale_perm), 00346 &(data_.pslu_freeable), &(data_.lu), 00347 &(data_.grid)); 00348 } 00349 00350 // Retrieve the normI of A (required by gstrf). 00351 double anorm = function_map::plangs((char *)"I", &(data_.A), &(data_.grid)); 00352 00353 int info = 0; 00354 { 00355 #ifdef HAVE_AMESOS2_TIMERS 00356 Teuchos::TimeMonitor numFactTimer(this->timers_.numFactTime_); 00357 #endif 00358 00359 function_map::gstrf(&(data_.options), this->globalNumRows_, 00360 this->globalNumCols_, anorm, &(data_.lu), 00361 &(data_.grid), &(data_.stat), &info); 00362 } 00363 00364 // Check output 00365 TEUCHOS_TEST_FOR_EXCEPTION( info > 0, 00366 std::runtime_error, 00367 "L and U factors have been computed but U(" 00368 << info << "," << info << ") is exactly zero " 00369 "(i.e. U is singular)"); 00370 } 00371 00372 // The other option, that info_st < 0, denotes invalid parameters 00373 // to the function, but we'll assume for now that that won't 00374 // happen. 00375 00376 data_.options.Fact = SLUD::FACTORED; 00377 same_symbolic_ = true; 00378 00379 return EXIT_SUCCESS; 00380 } 00381 00382 00383 template <class Matrix, class Vector> 00384 int 00385 Superludist<Matrix,Vector>::solve_impl(const Teuchos::Ptr<MultiVecAdapter<Vector> > X, 00386 const Teuchos::Ptr<const MultiVecAdapter<Vector> > B) const 00387 { 00388 using Teuchos::as; 00389 00390 // local_len_rhs is how many of the multivector rows belong to 00391 // this processor in the SuperLU_DIST processor grid. 00392 const size_t local_len_rhs = superlu_rowmap_->getNodeNumElements(); 00393 const global_size_type nrhs = X->getGlobalNumVectors(); 00394 const global_ordinal_type first_global_row_b = superlu_rowmap_->getMinGlobalIndex(); 00395 00396 // make sure our multivector storage is sized appropriately 00397 bvals_.resize(nrhs * local_len_rhs); 00398 xvals_.resize(nrhs * local_len_rhs); 00399 00400 // We assume the global length of the two vectors have already been 00401 // checked for compatibility 00402 00403 { // get the values from B 00404 #ifdef HAVE_AMESOS2_TIMERS 00405 Teuchos::TimeMonitor convTimer(this->timers_.vecConvTime_); 00406 #endif 00407 00408 { 00409 // The input dense matrix for B should be distributed in the 00410 // same manner as the superlu_dist matrix. That is, if a 00411 // processor has m_loc rows of A, then it should also have 00412 // m_loc rows of B (and the same rows). We accomplish this by 00413 // distributing the multivector rows with the same Map that 00414 // the matrix A's rows are distributed. 00415 #ifdef HAVE_AMESOS2_TIMERS 00416 Teuchos::TimeMonitor redistTimer(this->timers_.vecRedistTime_); 00417 #endif 00418 00419 // get grid-distributed mv data. The multivector data will be 00420 // distributed across the processes in the SuperLU_DIST grid. 00421 typedef Util::get_1d_copy_helper<MultiVecAdapter<Vector>,slu_type> copy_helper; 00422 copy_helper::do_get(B, 00423 bvals_(), 00424 local_len_rhs, 00425 Teuchos::ptrInArg(*superlu_rowmap_)); 00426 } 00427 } // end block for conversion time 00428 00429 if( in_grid_ ){ 00430 // if( data_.options.trans == SLUD::NOTRANS ){ 00431 // if( data_.rowequ ){ // row equilibration has been done on AC 00432 // // scale bxvals_ by diag(R) 00433 // Util::scale(bxvals_(), as<size_t>(len_rhs), ldbx_, data_.R(), 00434 // SLUD::slu_mt_mult<slu_type,magnitude_type>()); 00435 // } 00436 // } else if( data_.colequ ){ // column equilibration has been done on AC 00437 // // scale bxvals_ by diag(C) 00438 // Util::scale(bxvals_(), as<size_t>(len_rhs), ldbx_, data_.C(), 00439 // SLUD::slu_mt_mult<slu_type,magnitude_type>()); 00440 // } 00441 00442 // Initialize the SOLVEstruct_t. 00443 // 00444 // We are able to reuse the solve struct if we have not changed 00445 // the sparsity pattern of L and U since the last solve 00446 if( !same_solve_struct_ ){ 00447 if( data_.options.SolveInitialized == SLUD::YES ){ 00448 function_map::SolveFinalize(&(data_.options), &(data_.solve_struct)); 00449 } 00450 function_map::SolveInit(&(data_.options), &(data_.A), data_.perm_r.getRawPtr(), 00451 data_.perm_c.getRawPtr(), as<SLUD::int_t>(nrhs), &(data_.lu), 00452 &(data_.grid), &(data_.solve_struct)); 00453 // Flag that we can reuse this solve_struct unless another 00454 // symbolicFactorization is called between here and the next 00455 // solve. 00456 same_solve_struct_ = true; 00457 } 00458 00459 int ierr = 0; // returned error code 00460 { 00461 #ifdef HAVE_AMESOS2_TIMERS 00462 Teuchos::TimeMonitor solveTimer(this->timers_.solveTime_); 00463 #endif 00464 00465 function_map::gstrs(as<SLUD::int_t>(this->globalNumRows_), &(data_.lu), 00466 &(data_.scale_perm), &(data_.grid), bvals_.getRawPtr(), 00467 as<SLUD::int_t>(local_len_rhs), as<SLUD::int_t>(first_global_row_b), 00468 as<SLUD::int_t>(local_len_rhs), as<int>(nrhs), 00469 &(data_.solve_struct), &(data_.stat), &ierr); 00470 } // end block for solve time 00471 00472 TEUCHOS_TEST_FOR_EXCEPTION( ierr < 0, 00473 std::runtime_error, 00474 "Argument " << -ierr << " to gstrs had an illegal value" ); 00475 00476 // "Un-scale" the solution so that it is a solution of the original system 00477 // if( data_.options.trans == SLUD::NOTRANS ){ 00478 // if( data_.colequ ){ // column equilibration has been done on AC 00479 // // scale bxvals_ by diag(C) 00480 // Util::scale(bxvals_(), as<size_t>(len_rhs), ldbx_, data_.C(), 00481 // SLUD::slu_mt_mult<slu_type,magnitude_type>()); 00482 // } 00483 // } else if( data_.rowequ ){ // row equilibration has been done on AC 00484 // // scale bxvals_ by diag(R) 00485 // Util::scale(bxvals_(), as<size_t>(len_rhs), ldbx_, data_.R(), 00486 // SLUD::slu_mt_mult<slu_type,magnitude_type>()); 00487 // } 00488 { // permute B to a solution of the original system 00489 #ifdef HAVE_AMESOS2_TIMERS 00490 Teuchos::TimeMonitor redistTimer(this->timers_.vecRedistTime_); 00491 #endif 00492 SLUD::int_t ld = as<SLUD::int_t>(local_len_rhs); 00493 function_map::permute_Dense_Matrix(as<SLUD::int_t>(first_global_row_b), 00494 as<SLUD::int_t>(local_len_rhs), 00495 data_.solve_struct.row_to_proc, 00496 data_.solve_struct.inv_perm_c, 00497 bvals_.getRawPtr(), ld, 00498 xvals_.getRawPtr(), ld, 00499 as<int>(nrhs), 00500 &(data_.grid)); 00501 } 00502 } 00503 00504 /* Update X's global values */ 00505 { 00506 #ifdef HAVE_AMESOS2_TIMERS 00507 Teuchos::TimeMonitor redistTimer(this->timers_.vecRedistTime_); 00508 #endif 00509 00510 typedef Util::put_1d_data_helper<MultiVecAdapter<Vector>,slu_type> put_helper; 00511 put_helper::do_put(X, 00512 xvals_(), 00513 local_len_rhs, 00514 Teuchos::ptrInArg(*superlu_rowmap_)); 00515 } 00516 00517 return EXIT_SUCCESS; 00518 } 00519 00520 00521 template <class Matrix, class Vector> 00522 bool 00523 Superludist<Matrix,Vector>::matrixShapeOK_impl() const 00524 { 00525 // SuperLU_DIST requires square matrices 00526 return( this->globalNumRows_ == this->globalNumCols_ ); 00527 } 00528 00529 00530 template <class Matrix, class Vector> 00531 void 00532 Superludist<Matrix,Vector>::setParameters_impl(const Teuchos::RCP<Teuchos::ParameterList> & parameterList ) 00533 { 00534 using Teuchos::as; 00535 using Teuchos::RCP; 00536 using Teuchos::getIntegralValue; 00537 using Teuchos::ParameterEntryValidator; 00538 00539 RCP<const Teuchos::ParameterList> valid_params = getValidParameters_impl(); 00540 00541 if( parameterList->isParameter("npcol") || parameterList->isParameter("nprow") ){ 00542 TEUCHOS_TEST_FOR_EXCEPTION( !(parameterList->isParameter("nprow") && 00543 parameterList->isParameter("npcol")), 00544 std::invalid_argument, 00545 "nprow and npcol must be set together" ); 00546 00547 SLUD::int_t nprow = parameterList->template get<SLUD::int_t>("nprow"); 00548 SLUD::int_t npcol = parameterList->template get<SLUD::int_t>("npcol"); 00549 00550 TEUCHOS_TEST_FOR_EXCEPTION( nprow * npcol > this->getComm()->getSize(), 00551 std::invalid_argument, 00552 "nprow and npcol combination invalid" ); 00553 00554 if( (npcol != data_.grid.npcol) || (nprow != data_.grid.nprow) ){ 00555 // De-allocate the default grid that was initialized in the constructor 00556 SLUD::superlu_gridexit(&(data_.grid)); 00557 // Create a new grid 00558 SLUD::superlu_gridinit(data_.mat_comm, nprow, npcol, &(data_.grid)); 00559 } // else our grid has not changed size since the last initialization 00560 } 00561 00562 TEUCHOS_TEST_FOR_EXCEPTION( this->control_.useTranspose_, 00563 std::invalid_argument, 00564 "SuperLU_DIST does not support solving the tranpose system" ); 00565 00566 data_.options.Trans = SLUD::NOTRANS; // should always be set this way; 00567 00568 // TODO: Uncomment when supported 00569 // bool equil = parameterList->get<bool>("Equil", true); 00570 // data_.options.Equil = equil ? SLUD::YES : SLUD::NO; 00571 data_.options.Equil = SLUD::NO; 00572 00573 if( parameterList->isParameter("ColPerm") ){ 00574 RCP<const ParameterEntryValidator> colperm_validator = valid_params->getEntry("ColPerm").validator(); 00575 parameterList->getEntry("ColPerm").setValidator(colperm_validator); 00576 00577 data_.options.ColPerm = getIntegralValue<SLUD::colperm_t>(*parameterList, "ColPerm"); 00578 } 00579 00580 // Always use the "NOROWPERM" option to avoid a serial bottleneck 00581 // with the weighted bipartite matching algorithm used for the 00582 // "LargeDiag" RowPerm. Note the inconsistency with the SuperLU 00583 // User guide (which states that the value should be "NATURAL"). 00584 data_.options.RowPerm = SLUD::NOROWPERM; 00585 00586 // TODO: Uncomment when supported 00587 // if( parameterList->isParameter("IterRefine") ){ 00588 // RCP<const ParameterEntryValidator> iter_refine_validator = valid_params->getEntry("IterRefine").validator(); 00589 // parameterList->getEntry("IterRefine").setValidator(iter_refine_validator); 00590 00591 // data_.options.IterRefine = getIntegralValue<SLUD::IterRefine_t>(*parameterList, "IterRefine"); 00592 // } 00593 data_.options.IterRefine = SLUD::NOREFINE; 00594 00595 bool replace_tiny = parameterList->get<bool>("ReplaceTinyPivot", true); 00596 data_.options.ReplaceTinyPivot = replace_tiny ? SLUD::YES : SLUD::NO; 00597 } 00598 00599 00600 template <class Matrix, class Vector> 00601 Teuchos::RCP<const Teuchos::ParameterList> 00602 Superludist<Matrix,Vector>::getValidParameters_impl() const 00603 { 00604 using std::string; 00605 using Teuchos::tuple; 00606 using Teuchos::ParameterList; 00607 using Teuchos::EnhancedNumberValidator; 00608 using Teuchos::setStringToIntegralParameter; 00609 using Teuchos::stringToIntegralParameterEntryValidator; 00610 00611 static Teuchos::RCP<const Teuchos::ParameterList> valid_params; 00612 00613 if( is_null(valid_params) ){ 00614 Teuchos::RCP<Teuchos::ParameterList> pl = Teuchos::parameterList(); 00615 00616 Teuchos::RCP<EnhancedNumberValidator<SLUD::int_t> > col_row_validator 00617 = Teuchos::rcp( new EnhancedNumberValidator<SLUD::int_t>() ); 00618 col_row_validator->setMin(1); 00619 00620 pl->set("npcol", data_.grid.npcol, 00621 "Number of columns in the processor grid. " 00622 "Must be set with nprow", col_row_validator); 00623 pl->set("nprow", data_.grid.nprow, 00624 "Number of rows in the SuperLU_DIST processor grid. " 00625 "Must be set together with npcol", col_row_validator); 00626 00627 // validator will catch any value besides NOTRANS 00628 setStringToIntegralParameter<SLUD::trans_t>("Trans", "NOTRANS", 00629 "Solve for the transpose system or not", 00630 tuple<string>("NOTRANS"), 00631 tuple<string>("Do not solve with transpose"), 00632 tuple<SLUD::trans_t>(SLUD::NOTRANS), 00633 pl.getRawPtr()); 00634 00635 // TODO: uncomment when supported 00636 // pl->set("Equil", false, "Whether to equilibrate the system before solve"); 00637 00638 // TODO: uncomment when supported 00639 // setStringToIntegralParameter<SLUD::IterRefine_t>("IterRefine", "NOREFINE", 00640 // "Type of iterative refinement to use", 00641 // tuple<string>("NOREFINE", "DOUBLE"), 00642 // tuple<string>("Do not use iterative refinement", 00643 // "Do double iterative refinement"), 00644 // tuple<SLUD::IterRefine_t>(SLUD::NOREFINE, 00645 // SLUD::DOUBLE), 00646 // pl.getRawPtr()); 00647 00648 pl->set("ReplaceTinyPivot", true, 00649 "Specifies whether to replace tiny diagonals during LU factorization"); 00650 00651 setStringToIntegralParameter<SLUD::colperm_t>("ColPerm", "PARMETIS", 00652 "Specifies how to permute the columns of the " 00653 "matrix for sparsity preservation", 00654 tuple<string>("NATURAL", "PARMETIS"), 00655 tuple<string>("Natural ordering", 00656 "ParMETIS ordering on A^T + A"), 00657 tuple<SLUD::colperm_t>(SLUD::NATURAL, 00658 SLUD::PARMETIS), 00659 pl.getRawPtr()); 00660 00661 valid_params = pl; 00662 } 00663 00664 return valid_params; 00665 } 00666 00667 00668 template <class Matrix, class Vector> 00669 void 00670 Superludist<Matrix,Vector>::get_default_grid_size(int nprocs, 00671 SLUD::int_t& nprow, 00672 SLUD::int_t& npcol) const { 00673 TEUCHOS_TEST_FOR_EXCEPTION( nprocs < 1, 00674 std::invalid_argument, 00675 "Number of MPI processes must be at least 1" ); 00676 SLUD::int_t c, r = 1; 00677 while( r*r <= nprocs ) r++; 00678 nprow = npcol = --r; // fall back to square grid 00679 c = nprocs / r; 00680 while( (r--)*c != nprocs ){ 00681 c = nprocs / r; // note integer division 00682 } 00683 ++r; 00684 // prefer the square grid over a single row (which will only happen 00685 // in the case of a prime nprocs 00686 if( r > 1 || nprocs < 9){ // nprocs < 9 is a heuristic for the small cases 00687 nprow = r; 00688 npcol = c; 00689 } 00690 } 00691 00692 00693 template <class Matrix, class Vector> 00694 bool 00695 Superludist<Matrix,Vector>::loadA_impl(EPhase current_phase){ 00696 // Extract the necessary information from mat and call SLU function 00697 using Teuchos::Array; 00698 using Teuchos::ArrayView; 00699 using Teuchos::ptrInArg; 00700 using Teuchos::as; 00701 00702 using SLUD::int_t; 00703 00704 #ifdef HAVE_AMESOS2_TIMERS 00705 Teuchos::TimeMonitor convTimer(this->timers_.mtxConvTime_); 00706 #endif 00707 00708 // Cleanup old store memory if it's non-NULL 00709 if( data_.A.Store != NULL ){ 00710 SLUD::Destroy_SuperMatrix_Store_dist( &(data_.A) ); 00711 data_.A.Store = NULL; 00712 } 00713 00714 Teuchos::RCP<const MatrixAdapter<Matrix> > redist_mat 00715 = this->matrixA_->get(ptrInArg(*superlu_rowmap_)); 00716 00717 int_t l_nnz, l_rows, g_rows, g_cols, fst_global_row; 00718 l_nnz = as<int_t>(redist_mat->getLocalNNZ()); 00719 l_rows = as<int_t>(redist_mat->getLocalNumRows()); 00720 g_rows = as<int_t>(redist_mat->getGlobalNumRows()); 00721 g_cols = g_rows; // we deal with square matrices 00722 fst_global_row = as<int_t>(superlu_rowmap_->getMinGlobalIndex()); 00723 00724 nzvals_.resize(l_nnz); 00725 colind_.resize(l_nnz); 00726 rowptr_.resize(l_rows + 1); 00727 00728 int_t nnz_ret = 0; 00729 { 00730 #ifdef HAVE_AMESOS2_TIMERS 00731 Teuchos::TimeMonitor mtxRedistTimer( this->timers_.mtxRedistTime_ ); 00732 #endif 00733 00734 Util::get_crs_helper< 00735 MatrixAdapter<Matrix>, 00736 slu_type, int_t, int_t >::do_get(redist_mat.ptr(), 00737 nzvals_(), colind_(), rowptr_(), 00738 nnz_ret, 00739 ptrInArg(*superlu_rowmap_), 00740 ARBITRARY); 00741 } 00742 00743 TEUCHOS_TEST_FOR_EXCEPTION( nnz_ret != l_nnz, 00744 std::runtime_error, 00745 "Did not get the expected number of non-zero vals"); 00746 00747 // Get the SLU data type for this type of matrix 00748 SLUD::Dtype_t dtype = type_map::dtype; 00749 00750 if( in_grid_ ){ 00751 function_map::create_CompRowLoc_Matrix(&(data_.A), 00752 g_rows, g_cols, 00753 l_nnz, l_rows, fst_global_row, 00754 nzvals_.getRawPtr(), 00755 colind_.getRawPtr(), 00756 rowptr_.getRawPtr(), 00757 SLUD::SLU_NR_loc, 00758 dtype, SLUD::SLU_GE); 00759 } 00760 00761 return true; 00762 } 00763 00764 00765 template<class Matrix, class Vector> 00766 const char* Superludist<Matrix,Vector>::name = "SuperLU_DIST"; 00767 00768 00769 } // end namespace Amesos2 00770 00771 #endif // AMESOS2_SUPERLUDIST_DEF_HPP
1.7.6.1