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// @HEADER // *********************************************************************** // // Didasko Tutorial Package // Copyright (2005) Sandia Corporation // // Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive // license for use of this work by or on behalf of the U.S. Government. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions are // met: // // 1. Redistributions of source code must retain the above copyright // notice, this list of conditions and the following disclaimer. // // 2. Redistributions in binary form must reproduce the above copyright // notice, this list of conditions and the following disclaimer in the // documentation and/or other materials provided with the distribution. // // 3. Neither the name of the Corporation nor the names of the // contributors may be used to endorse or promote products derived from // this software without specific prior written permission. // // THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY // EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR // PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE // CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR // PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF // LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING // NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS // SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. // // Questions about Didasko? Contact Marzio Sala (marzio.sala _AT_ gmail.com) // // *********************************************************************** // @HEADER // Output a CRS matrix in MATLAB format #include "Didasko_ConfigDefs.h" #if defined(HAVE_DIDASKO_EPETRA) #include "Epetra_ConfigDefs.h" #ifdef HAVE_MPI #include "mpi.h" #include "Epetra_MpiComm.h" #else #include "Epetra_SerialComm.h" #endif #include "Epetra_Map.h" #include "Epetra_Vector.h" #include "Epetra_CrsMatrix.h" // ============================================================ // define a class, derived from Epetra_CrsMatrix, which // initializes the matrix entires. User has to provide // a valid Epetra_Map in the constructor, plus the diagonal // value, and the sub- and super-diagonal values. // ============================================================ class TridiagonalCrsMatrix : public Epetra_CrsMatrix { public: TridiagonalCrsMatrix(const Epetra_Map & Map, double a, double diag, double c) : Epetra_CrsMatrix(Copy,Map,3) { // global number of rows int NumGlobalElements = Map.NumGlobalElements(); // local number of rows int NumMyElements = Map.NumMyElements(); // get update list int * MyGlobalElements = new int [NumMyElements]; Map.MyGlobalElements( MyGlobalElements ); // Add rows one-at-a-time // Need some vectors to help // Off diagonal Values will always be -1 double *Values = new double[2]; Values[0] = a; Values[1] = c; int *Indices = new int[2]; int NumEntries; for( int i=0 ; i<NumMyElements; ++i ) { if (MyGlobalElements[i]==0) { Indices[0] = 1; NumEntries = 1; } else if (MyGlobalElements[i] == NumGlobalElements-1) { Indices[0] = NumGlobalElements-2; NumEntries = 1; } else { Indices[0] = MyGlobalElements[i]-1; Indices[1] = MyGlobalElements[i]+1; NumEntries = 2; } InsertGlobalValues(MyGlobalElements[i], NumEntries, Values, Indices); // Put in the diagonal entry InsertGlobalValues(MyGlobalElements[i], 1, &diag, MyGlobalElements+i); } FillComplete(); delete[] MyGlobalElements; delete[] Values; delete[] Indices; } }; /* ======== ================ * * function CrsMatrix2MATLAB * * ======== ================ * * * Print out a CrsMatrix in a MATLAB format. Each processor prints out * its part, starting from proc 0 to proc NumProc-1. The first line of * each processor's output states the number of local rows and of * local nonzero elements. Output is finished by "End of Matrix Output". * * * Return code: true if matrix has been printed out * ----------- false otherwise * * Parameters: * ---------- * * - Epetra_CrsMatrix reference to the ditributed CrsMatrix to * print out */ bool CrsMatrix2MATLAB( const Epetra_CrsMatrix & A ) { int MyPID = A.Comm().MyPID(); int NumProc = A.Comm().NumProc(); // work only on transformed matrices; if( A.IndicesAreLocal() == false ) { if( MyPID == 0 ) { cerr << "ERROR in "<< __FILE__ << ", line " << __LINE__ << endl; cerr << "Function CrsMatrix2MATLAB accepts\n"; cerr << "transformed matrices ONLY. Please call A.FillComplete()\n"; cerr << "on your matrix A to that purpose.\n"; cerr << "Now returning...\n"; } return false; } int NumMyRows = A.NumMyRows(); // number of rows on this process int NumNzRow; // number of nonzero elements for each row int NumEntries; // number of extracted elements for each row int NumGlobalRows; // global dimensio of the problem int GlobalRow; // row in global ordering int NumGlobalNonzeros; // global number of nonzero elements NumGlobalRows = A.NumGlobalRows(); NumGlobalNonzeros = A.NumGlobalNonzeros(); // print out on cout if no filename is provided int IndexBase = A.IndexBase(); // MATLAB start from 0 if( IndexBase == 0 ) IndexBase = 1; // write on file the dimension of the matrix if( MyPID==0 ) { cout << "A = spalloc("; cout << NumGlobalRows << ',' << NumGlobalRows; cout << ',' << NumGlobalNonzeros << ");\n"; } for( int Proc=0 ; Proc<NumProc ; ++Proc ) { if( MyPID == Proc ) { cout << "% On proc " << Proc << ": "; cout << NumMyRows << " rows and "; cout << A.NumMyNonzeros() << " nonzeros\n"; // cycle over all local rows to find out nonzero elements for( int MyRow=0 ; MyRow<NumMyRows ; ++MyRow ) { GlobalRow = A.GRID(MyRow); NumNzRow = A.NumMyEntries(MyRow); double *Values = new double[NumNzRow]; int *Indices = new int[NumNzRow]; A.ExtractMyRowCopy(MyRow, NumNzRow, NumEntries, Values, Indices); // print out the elements with MATLAB syntax for( int j=0 ; j<NumEntries ; ++j ) { cout << "A(" << GlobalRow + IndexBase << "," << A.GCID(Indices[j]) + IndexBase << ") = " << Values[j] << ";\n"; } delete[] Values; delete[] Indices; } } A.Comm().Barrier(); if( MyPID == 0 ) { cout << " %End of Matrix Output\n"; } } return true; } // =========== // // main driver // // =========== // int main(int argc, char *argv[]) { #ifdef HAVE_MPI MPI_Init(&argc, &argv); Epetra_MpiComm Comm(MPI_COMM_WORLD); #else Epetra_SerialComm Comm; #endif // set global dimension to 5, could be any number int NumGlobalElements = 5; // define a linear map Epetra_Map Map(NumGlobalElements,0,Comm); // create the matrix TridiagonalCrsMatrix A( Map, -1.0, 2.0, -1.0); // output informationto stdout CrsMatrix2MATLAB( A ); #ifdef HAVE_MPI MPI_Finalize(); #endif return( EXIT_SUCCESS ); } #else #include <stdlib.h> #include <stdio.h> int main(int argc, char *argv[]) { puts("Please configure Didasko with:\n" "--enable-epetra"); return 0; } #endif
1.7.6.1