GLpApp Namespace Reference

Classes
class	AdvDiffReactOptModel
	PDE-constrained inverse problem based on a 2D discretization of a diffusion/reaction system. More...
class	AdvDiffReactOptModelCreator
	A utility class for creating an AdvDiffReactOptModelCreator/tt> object by reading from the command-line. More...
class	GLpYUEpetraDataPool
class	Usr_Par
Functions
std::ostream &	operator<< (std::ostream &, const Usr_Par &)
bool	CrsMatrix2MATLAB (const Epetra_CrsMatrix &, std::ostream &)
bool	Vector2MATLAB (const Epetra_Vector &, std::ostream &)
bool	FEVector2MATLAB (const Epetra_FEVector &, std::ostream &)
int	quadrature (const int, const int, Epetra_SerialDenseMatrix &, Epetra_SerialDenseVector &)
int	meshreader (const Epetra_Comm &, Epetra_IntSerialDenseVector &, Epetra_SerialDenseMatrix &, Epetra_IntSerialDenseVector &, Epetra_SerialDenseMatrix &, Epetra_IntSerialDenseMatrix &, Epetra_IntSerialDenseMatrix &, const char geomFileBase[], const bool trace=true, const bool dumpAll=false)
int	lassembly (const Epetra_SerialDenseMatrix &, const Epetra_SerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_SerialDenseVector &, const Epetra_SerialDenseVector &, const Usr_Par &, Epetra_SerialDenseMatrix &, Epetra_SerialDenseVector &)
int	assemblyFECrs (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int	assemblyFECrs (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FEVector > &, bool)
int	assemble (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int	assemble_bdry (const Epetra_Comm &Comm, const Epetra_IntSerialDenseVector &ipindx, const Epetra_SerialDenseMatrix &ipcoords, const Epetra_IntSerialDenseVector &pindx, const Epetra_SerialDenseMatrix &pcoords, const Epetra_IntSerialDenseMatrix &t, const Epetra_IntSerialDenseMatrix &e, Teuchos::RefCountPtr< Epetra_FECrsMatrix > *B, Teuchos::RefCountPtr< Epetra_FECrsMatrix > *R)
int	nonlinvec (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int	nonlinjac (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, Teuchos::RefCountPtr< Epetra_FECrsMatrix > &)
int	nonlinhessvec (const Epetra_Comm &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseVector &, const Epetra_SerialDenseMatrix &, const Epetra_IntSerialDenseMatrix &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, const Teuchos::RefCountPtr< const Epetra_MultiVector > &, Teuchos::RefCountPtr< Epetra_FEVector > &)
int	compproduct (Epetra_SerialDenseVector &, double *, double *)
int	compproduct (Epetra_SerialDenseVector &, double *, double *, double *)
double	determinant (const Epetra_SerialDenseMatrix &)
int	inverse (const Epetra_SerialDenseMatrix &, Epetra_SerialDenseMatrix &)
void	gpfctn (const Epetra_SerialDenseVector &v, Epetra_SerialDenseVector &gv)
void	g2pfctn (const Epetra_SerialDenseVector &, Epetra_SerialDenseVector &)
void	gfctn (const Epetra_SerialDenseVector &, Epetra_SerialDenseVector &)
void	rect2DMeshGenerator (const int numProc, const int procRank, const double len_x, const double len_y, const int local_nx, const int local_ny, const int bndy_marker, Epetra_IntSerialDenseVector *ipindx_out, Epetra_SerialDenseMatrix *ipcoords_out, Epetra_IntSerialDenseVector *pindx_out, Epetra_SerialDenseMatrix *pcoords_out, Epetra_IntSerialDenseMatrix *t_out, Epetra_IntSerialDenseMatrix *e_out, std::ostream *out, const bool dumpAll)
	Generate a simple rectangular 2D triangular mesh that is only partitioned between processors in the y direction.
Variables
const double	GLp_pi = 3.14159265358979323846

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Function Documentation

std::ostream & GLpApp::operator<<	(	std::ostream &	out,
		const Usr_Par &	usr_par
	)

Definition at line 816 of file GLpApp_GLpYUEpetraDataPool.cpp.

bool GLpApp::CrsMatrix2MATLAB	(	const Epetra_CrsMatrix &	A,
		std::ostream &	outfile
	)

Definition at line 2127 of file GLpApp_GLpYUEpetraDataPool.cpp.

bool GLpApp::Vector2MATLAB	(	const Epetra_Vector &	v,
		std::ostream &	outfile
	)

Definition at line 2229 of file GLpApp_GLpYUEpetraDataPool.cpp.

bool GLpApp::FEVector2MATLAB	(	const Epetra_FEVector &	v,
		std::ostream &	outfile
	)

Definition at line 2297 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::quadrature	(	const int	dim,
		const int	order,
		Epetra_SerialDenseMatrix &	nodes,
		Epetra_SerialDenseVector &	weights
	)

Definition at line 2358 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::meshreader	(	const Epetra_Comm &	Comm,
		Epetra_IntSerialDenseVector &	ipindx,
		Epetra_SerialDenseMatrix &	ipcoords,
		Epetra_IntSerialDenseVector &	pindx,
		Epetra_SerialDenseMatrix &	pcoords,
		Epetra_IntSerialDenseMatrix &	t,
		Epetra_IntSerialDenseMatrix &	e,
		const char	geomFileBase[],
		const bool	trace = true,
		const bool	dumpAll = false
	)

Definition at line 1553 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::lassembly	(	const Epetra_SerialDenseMatrix &	vertices,
		const Epetra_SerialDenseVector &	k,
		const Epetra_SerialDenseMatrix &	c,
		const Epetra_SerialDenseVector &	r,
		const Epetra_SerialDenseVector &	f,
		const Usr_Par &	usr_par,
		Epetra_SerialDenseMatrix &	At,
		Epetra_SerialDenseVector &	bt
	)

Definition at line 1414 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::assemblyFECrs	(	const Epetra_Comm &	,
		const Epetra_IntSerialDenseVector &	,
		const Epetra_SerialDenseMatrix &	,
		const Epetra_IntSerialDenseVector &	,
		const Epetra_SerialDenseMatrix &	,
		const Epetra_IntSerialDenseMatrix &	,
		const Epetra_IntSerialDenseMatrix &	,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > &	,
		Teuchos::RefCountPtr< Epetra_FEVector > &
	)

int GLpApp::assemblyFECrs	(	const Epetra_Comm &	,
		const Epetra_IntSerialDenseVector &	,
		const Epetra_SerialDenseMatrix &	,
		const Epetra_IntSerialDenseVector &	,
		const Epetra_SerialDenseMatrix &	,
		const Epetra_IntSerialDenseMatrix &	,
		const Epetra_IntSerialDenseMatrix &	,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > &	,
		Teuchos::RefCountPtr< Epetra_FEVector > &	,
		bool
	)

int GLpApp::assemble	(	const Epetra_Comm &	,
		const Epetra_IntSerialDenseVector &	,
		const Epetra_SerialDenseMatrix &	,
		const Epetra_IntSerialDenseVector &	,
		const Epetra_SerialDenseMatrix &	,
		const Epetra_IntSerialDenseMatrix &	,
		const Epetra_IntSerialDenseMatrix &	,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > &	,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > &	,
		Teuchos::RefCountPtr< Epetra_FEVector > &
	)

int GLpApp::assemble_bdry	(	const Epetra_Comm &	Comm,
		const Epetra_IntSerialDenseVector &	ipindx,
		const Epetra_SerialDenseMatrix &	ipcoords,
		const Epetra_IntSerialDenseVector &	pindx,
		const Epetra_SerialDenseMatrix &	pcoords,
		const Epetra_IntSerialDenseMatrix &	t,
		const Epetra_IntSerialDenseMatrix &	e,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > *	B,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > *	R
	)

Definition at line 890 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::nonlinvec	(	const Epetra_Comm &	Comm,
		const Epetra_IntSerialDenseVector &	ipindx,
		const Epetra_SerialDenseMatrix &	ipcoords,
		const Epetra_IntSerialDenseVector &	pindx,
		const Epetra_SerialDenseMatrix &	pcoords,
		const Epetra_IntSerialDenseMatrix &	t,
		const Teuchos::RefCountPtr< const Epetra_MultiVector > &	y,
		Teuchos::RefCountPtr< Epetra_FEVector > &	g
	)

Definition at line 1990 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::nonlinjac	(	const Epetra_Comm &	Comm,
		const Epetra_IntSerialDenseVector &	ipindx,
		const Epetra_SerialDenseMatrix &	ipcoords,
		const Epetra_IntSerialDenseVector &	pindx,
		const Epetra_SerialDenseMatrix &	pcoords,
		const Epetra_IntSerialDenseMatrix &	t,
		const Teuchos::RefCountPtr< const Epetra_MultiVector > &	y,
		Teuchos::RefCountPtr< Epetra_FECrsMatrix > &	Gp
	)

Definition at line 1840 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::nonlinhessvec	(	const Epetra_Comm &	Comm,
		const Epetra_IntSerialDenseVector &	ipindx,
		const Epetra_SerialDenseMatrix &	ipcoords,
		const Epetra_IntSerialDenseVector &	pindx,
		const Epetra_SerialDenseMatrix &	pcoords,
		const Epetra_IntSerialDenseMatrix &	t,
		const Teuchos::RefCountPtr< const Epetra_MultiVector > &	y,
		const Teuchos::RefCountPtr< const Epetra_MultiVector > &	s,
		const Teuchos::RefCountPtr< const Epetra_MultiVector > &	lambda,
		Teuchos::RefCountPtr< Epetra_FEVector > &	hessvec
	)

Definition at line 1676 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::compproduct	(	Epetra_SerialDenseVector &	product,
		double *	first,
		double *	second
	)

Definition at line 828 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::compproduct	(	Epetra_SerialDenseVector &	product,
		double *	first,
		double *	second,
		double *	third
	)

Definition at line 837 of file GLpApp_GLpYUEpetraDataPool.cpp.

double GLpApp::determinant

(

const Epetra_SerialDenseMatrix &

mat

)

Definition at line 1524 of file GLpApp_GLpYUEpetraDataPool.cpp.

int GLpApp::inverse	(	const Epetra_SerialDenseMatrix &	mat,
		Epetra_SerialDenseMatrix &	inv
	)

Definition at line 1500 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::gpfctn	(	const Epetra_SerialDenseVector &	v,
		Epetra_SerialDenseVector &	gv
	)

Definition at line 1952 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::g2pfctn	(	const Epetra_SerialDenseVector &	v,
		Epetra_SerialDenseVector &	gv
	)

Definition at line 1802 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::gfctn	(	const Epetra_SerialDenseVector &	v,
		Epetra_SerialDenseVector &	gv
	)

Definition at line 2100 of file GLpApp_GLpYUEpetraDataPool.cpp.

void GLpApp::rect2DMeshGenerator	(	const int	numProc,
		const int	procRank,
		const double	len_x,
		const double	len_y,
		const int	local_nx,
		const int	local_ny,
		const int	bndy_marker,
		Epetra_IntSerialDenseVector *	ipindx_out,
		Epetra_SerialDenseMatrix *	ipcoords_out,
		Epetra_IntSerialDenseVector *	pindx_out,
		Epetra_SerialDenseMatrix *	pcoords_out,
		Epetra_IntSerialDenseMatrix *	t_out,
		Epetra_IntSerialDenseMatrix *	e_out,
		std::ostream *	out,
		const bool	dumpAll
	)

Generate a simple rectangular 2D triangular mesh that is only partitioned between processors in the y direction.

ToDo: Finish documentation!

Definition at line 52 of file rect2DMeshGenerator.cpp.

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Variable Documentation

const double GLpApp::GLp_pi = 3.14159265358979323846

Definition at line 95 of file GLpApp_GLpYUEpetraDataPool.cpp.