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Extension of the NOX::Epetra::Group to LOCA. More...
#include <LOCA_Epetra_Group.H>


Public Member Functions | |
| Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, Teuchos::ParameterList &printingParams, const Teuchos::RCP< LOCA::Epetra::Interface::Required > &i, NOX::Epetra::Vector &initialGuess, const LOCA::ParameterVector &p) | |
| Constructor with NO linear system (VERY LIMITED). | |
| Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, Teuchos::ParameterList &printingParams, const Teuchos::RCP< LOCA::Epetra::Interface::Required > &i, NOX::Epetra::Vector &initialGuess, const Teuchos::RCP< NOX::Epetra::LinearSystem > &linSys, const LOCA::ParameterVector &p) | |
| Standard Constructor enabling most LOCA support. | |
| Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, Teuchos::ParameterList &printingParams, const Teuchos::RCP< LOCA::Epetra::Interface::TimeDependent > &i, NOX::Epetra::Vector &initialGuess, const Teuchos::RCP< NOX::Epetra::LinearSystem > &linSys, const Teuchos::RCP< NOX::Epetra::LinearSystem > &shiftedLinSys, const LOCA::ParameterVector &p) | |
| Constructor with time-dependent interface and shifted linear system. | |
| Group (const Teuchos::RCP< LOCA::GlobalData > &global_data, Teuchos::ParameterList &printingParams, const Teuchos::RCP< LOCA::Epetra::Interface::TimeDependentMatrixFree > &i, NOX::Epetra::Vector &initialGuess, const Teuchos::RCP< NOX::Epetra::LinearSystem > &linSys, const Teuchos::RCP< NOX::Epetra::LinearSystem > &shiftedLinSys, const LOCA::ParameterVector &p) | |
| Constructor with time-dependent matrix-free interface and shifted linear system. | |
| Group (const Group &source, NOX::CopyType type=NOX::DeepCopy) | |
| Copy constructor. If type is DeepCopy, takes ownership of valid shared Jacobian and shared preconditioning matrix. | |
| virtual | ~Group () |
| Destructor. | |
| virtual Group & | operator= (const Group &source) |
| Assignment operator. | |
| virtual void | setFreeEnergyInterface (const Teuchos::RCP< LOCA::Epetra::Interface::FreeEnergy > &iFE) |
| Method to inject an interface for calucatiuong the free energy. | |
| void | declareSeparateMatrixMemory (bool separateMem=true) |
| Method for calling code to guarantee to LOCA that separate matrix. | |
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virtual Teuchos::RCP < NOX::Epetra::Interface::Required > | getUserInterface () |
| Return the userInterface. | |
| virtual void | printSolution (const NOX::Epetra::Vector &x, const double conParam) const |
| Call the user interface print() routine, any vector. | |
| void | setScaleVector (const NOX::Abstract::Vector &s) |
| Sets the scale vector. | |
| void | setJacobianOperatorForSolve (const Teuchos::RCP< const Epetra_Operator > &op) const |
| Sets the Jacobian operator. | |
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virtual Teuchos::RCP< const NOX::Epetra::LinearSystem > | getComplexLinearSystem () const |
| Return the Linear System. | |
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virtual Teuchos::RCP < NOX::Epetra::LinearSystem > | getComplexLinearSystem () |
| Return the Linear System. | |
| virtual void | getComplexMaps (Teuchos::RCP< const Epetra_BlockMap > &baseMap, Teuchos::RCP< const Epetra_BlockMap > &globalMap) const |
Overloaded NOX::Epetra::Group methods. | |
| virtual NOX::Abstract::Group & | operator= (const NOX::Abstract::Group &source) |
| Assignment operator. | |
| virtual NOX::Abstract::Group & | operator= (const NOX::Epetra::Group &source) |
| Assignment operator. | |
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virtual Teuchos::RCP < NOX::Abstract::Group > | clone (NOX::CopyType type=NOX::DeepCopy) const |
| Cloning function. | |
| virtual NOX::Abstract::Group::ReturnType | computeF () |
| Overloaded computeF() | |
| virtual NOX::Abstract::Group::ReturnType | computeJacobian () |
| Overloaded computeJacobian() | |
Implementation of LOCA::Abstract::TransposeSolveGroup methods. | |
| virtual NOX::Abstract::Group::ReturnType | applyJacobianTransposeInverse (Teuchos::ParameterList ¶ms, const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const |
| Solve Jacobian-tranpose system. | |
| virtual NOX::Abstract::Group::ReturnType | applyJacobianTransposeInverseMultiVector (Teuchos::ParameterList ¶ms, const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const |
| Solve Jacobian-tranpose system with multiple right-hand sides. | |
Implementation of LOCA::MultiContinuation::AbstractGroup virtual methods. | |
| virtual void | copy (const NOX::Abstract::Group &source) |
| Copy. | |
| virtual void | setParams (const ParameterVector &p) |
| Set the parameters. | |
| virtual void | setParam (int paramID, double val) |
| Set parameter indexed by paramID. | |
| virtual void | setParam (std::string paramID, double val) |
| Set parameter indexed by paramID. | |
| const LOCA::ParameterVector & | getParams () const |
| Return a const reference to the ParameterVector owned by the group. | |
| virtual double | getParam (int paramID) const |
| Return copy of parameter indexed by paramID. | |
| virtual double | getParam (std::string paramID) const |
| Return copy of parameter indexed by paramID. | |
| virtual void | preProcessContinuationStep (LOCA::Abstract::Iterator::StepStatus stepStatus) |
| Perform any preprocessing before a continuation step starts. | |
| virtual void | postProcessContinuationStep (LOCA::Abstract::Iterator::StepStatus stepStatus) |
| Perform any postprocessing after a continuation step finishes. | |
| virtual void | projectToDraw (const NOX::Abstract::Vector &x, double *px) const |
| Projects solution to a few scalars for multiparameter continuation. | |
| virtual int | projectToDrawDimension () const |
| Returns the dimension of the project to draw array. | |
| virtual double | computeScaledDotProduct (const NOX::Abstract::Vector &a, const NOX::Abstract::Vector &b) const |
| Compute a scaled dot product. | |
| virtual void | printSolution (const double conParam) const |
| Call the user interface print() routine, solution vector. | |
| virtual void | printSolution (const NOX::Abstract::Vector &x, const double conParam) const |
| Call the user interface print() routine, any vector. | |
| virtual void | scaleVector (NOX::Abstract::Vector &x) const |
| Scales a vector using scaling vector. | |
Implementation of LOCA::Homotopy::AbstractGroup virtual methods. | |
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virtual NOX::Abstract::Group::ReturnType | augmentJacobianForHomotopy (double a, double b) |
Replace Jacobian by where is the identity matrix. | |
Implementation of LOCA::TimeDependent::AbstractGroup virtual methods. | |
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virtual NOX::Abstract::Group::ReturnType | computeShiftedMatrix (double alpha, double beta) |
| Compute the shifted matrix. | |
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virtual NOX::Abstract::Group::ReturnType | applyShiftedMatrix (const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const |
| Multiply the shifted matrix by a vector. | |
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virtual NOX::Abstract::Group::ReturnType | applyShiftedMatrixMultiVector (const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const |
| Multiply the shifted matrix by a multi-vector. | |
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virtual NOX::Abstract::Group::ReturnType | applyShiftedMatrixInverseMultiVector (Teuchos::ParameterList ¶ms, const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const |
| Apply the inverse of the shifted matrix by a multi-vector, as needed by the shift-and-invert and generalized Cayley transformations. | |
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virtual NOX::Abstract::Group::ReturnType | computeSecondShiftedMatrix (double alpha, double beta) |
| Compute the second shifted matrix (uses different memory then Shifted matrix) | |
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virtual NOX::Abstract::Group::ReturnType | applySecondShiftedMatrix (const NOX::Abstract::Vector &input, NOX::Abstract::Vector &result) const |
| Multiply the second shifted matrix by a vector. | |
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virtual NOX::Abstract::Group::ReturnType | applySecondShiftedMatrixMultiVector (const NOX::Abstract::MultiVector &input, NOX::Abstract::MultiVector &result) const |
| Multiply the second shifted matrix by a multi-vector. | |
Implementation of LOCA::Hopf::MooreSpence::AbstractGroup virtual methods. | |
| virtual bool | isComplex () const |
Is valid. | |
| virtual NOX::Abstract::Group::ReturnType | computeComplex (double frequency) |
Compute . | |
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virtual NOX::Abstract::Group::ReturnType | applyComplex (const NOX::Abstract::Vector &input_real, const NOX::Abstract::Vector &input_imag, NOX::Abstract::Vector &result_real, NOX::Abstract::Vector &result_imag) const |
Compute . | |
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virtual NOX::Abstract::Group::ReturnType | applyComplexMultiVector (const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const |
Compute . | |
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virtual NOX::Abstract::Group::ReturnType | applyComplexInverseMultiVector (Teuchos::ParameterList ¶ms, const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const |
Solve . | |
Implementation of LOCA::Hopf::MinimallyAugmented::AbstractGroup virtual methods. | |
| virtual NOX::Abstract::Group::ReturnType | applyComplexTranspose (const NOX::Abstract::Vector &input_real, const NOX::Abstract::Vector &input_imag, NOX::Abstract::Vector &result_real, NOX::Abstract::Vector &result_imag) const |
| virtual NOX::Abstract::Group::ReturnType | applyComplexTransposeMultiVector (const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const |
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virtual NOX::Abstract::Group::ReturnType | applyComplexTransposeInverseMultiVector (Teuchos::ParameterList ¶ms, const NOX::Abstract::MultiVector &input_real, const NOX::Abstract::MultiVector &input_imag, NOX::Abstract::MultiVector &result_real, NOX::Abstract::MultiVector &result_imag) const |
Solve . | |
Implementation of LOCA::PhseTransition::AbstractGroup virtual methods. | |
| virtual double | computeFreeEnergy () |
| Computes the free energy at the current solution and parameter values. | |
Protected Member Functions | |
| virtual void | resetIsValid () |
| resets the isValid flags to false | |
Protected Attributes | |
| Teuchos::RCP< LOCA::GlobalData > | globalData |
| Global data. | |
| Teuchos::ParameterList & | printParams |
| Printing parameters. | |
| LOCA::ParameterVector | params |
| Parameter vector. | |
|
Teuchos::RCP < LOCA::Epetra::Interface::Required > | userInterface |
| Reference to the user supplied interface functions. | |
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Teuchos::RCP < LOCA::Epetra::Interface::TimeDependent > | userInterfaceTime |
| Interface for shifted-matrix. | |
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Teuchos::RCP < LOCA::Epetra::Interface::TimeDependentMatrixFree > | userInterfaceTimeMF |
| Interface for matrix-free shifted-matrix. | |
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Teuchos::RCP < LOCA::Epetra::Interface::FreeEnergy > | userInterfaceFreeEnergy |
| Interface for free enerfgy calculation for phase transitions. | |
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Teuchos::RCP < NOX::SharedObject < NOX::Epetra::LinearSystem, LOCA::Epetra::Group > > | shiftedSharedLinearSystem |
| Shared shifted linear system. | |
| bool | isValidShiftedPrec |
| Is preconditioner for shifted matrix valid. | |
| double | alpha_ |
for matrix-free shifted matrix | |
| double | beta_ |
for matrix-free shifted matrix | |
| Teuchos::RCP< Epetra_Vector > | tmpVectorPtr2 |
| Extra vector needed for intermediate calculations of LOCA routines. | |
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Teuchos::RCP < NOX::Abstract::Vector > | scaleVecPtr |
| Stores a pointer to the scale vector. | |
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Teuchos::RCP < LOCA::Epetra::TransposeLinearSystem::AbstractStrategy > | tls_strategy |
| Stores transpose linear solver strategy. | |
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Teuchos::RCP < NOX::SharedObject < NOX::Epetra::LinearSystem, LOCA::Epetra::Group > > | complexSharedLinearSystem |
| Shared complex system. | |
|
Teuchos::RCP < EpetraExt::BlockCrsMatrix > | complexMatrix |
| Complex matrix. | |
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Teuchos::RCP < EpetraExt::BlockVector > | complexVec |
| Complex vector. | |
| bool | isValidComplex |
| Is complex matrix valid. | |
| bool | isValidComplexPrec |
| Is complex matrix preconditioner valid. | |
| bool | separateMatrixMemoryDeclared |
| Is complex matrix valid. | |
Extension of the NOX::Epetra::Group to LOCA.
This class extends the NOX::Epetra::Group to LOCA enabling continuation and bifurcation capabilities using Epetra. It is derived from the NOX::Epetra::Group (basic Epetra support), the LOCA::Abstract::Group (brings in all LOCA abstract base classes), and the LOCA::Abstract::TransposeSolveGroup (for applyJacobianTransposeInverse() methods). It stores a parameter vector for setting/retrieving parameter values and overloads the computeF() and computeJacobian() methods of the NOX::Epetra::Group parent class to set the entire contents of the parameter vector in the problem interface before calling the NOX::Epetra::Group computeF() and computeJacobian().
Since it is derived from the LOCA::Abstract::Group (which is in turn derived from all FiniteDifference groups), it uses the finite-difference implementations for all parameter derivatives and second derivatives. However this behavior can be modified by calling the setDerivUtils() method of the LOCA::MultiContinuation::FiniteDifferenceGroup parent class.
This class provides complete support for all continuation and bifurcation methods including shift-invert and Cayley methods for computing eigenvalues and Hopf bifurcations. However this support is only enabled by calling the appropriate constructor described below.
| LOCA::Epetra::Group::Group | ( | const Teuchos::RCP< LOCA::GlobalData > & | global_data, |
| Teuchos::ParameterList & | printingParams, | ||
| const Teuchos::RCP< LOCA::Epetra::Interface::Required > & | i, | ||
| NOX::Epetra::Vector & | initialGuess, | ||
| const LOCA::ParameterVector & | p | ||
| ) |
Constructor with NO linear system (VERY LIMITED).
WARNING: If this constructor is used, then methods that require a Jacobian or preconditioning will not be available. You will be limited to simple algorithms like nonlinear-CG with no preconditioning.
| LOCA::Epetra::Group::Group | ( | const Teuchos::RCP< LOCA::GlobalData > & | global_data, |
| Teuchos::ParameterList & | printingParams, | ||
| const Teuchos::RCP< LOCA::Epetra::Interface::Required > & | i, | ||
| NOX::Epetra::Vector & | initialGuess, | ||
| const Teuchos::RCP< NOX::Epetra::LinearSystem > & | linSys, | ||
| const LOCA::ParameterVector & | p | ||
| ) |
Standard Constructor enabling most LOCA support.
This is the most commonly used constructor and provides support for all LOCA algorithms except shift-invert and Cayley transformations and Hopf bifurcations.
| LOCA::Epetra::Group::Group | ( | const Teuchos::RCP< LOCA::GlobalData > & | global_data, |
| Teuchos::ParameterList & | printingParams, | ||
| const Teuchos::RCP< LOCA::Epetra::Interface::TimeDependent > & | i, | ||
| NOX::Epetra::Vector & | initialGuess, | ||
| const Teuchos::RCP< NOX::Epetra::LinearSystem > & | linSys, | ||
| const Teuchos::RCP< NOX::Epetra::LinearSystem > & | shiftedLinSys, | ||
| const LOCA::ParameterVector & | p | ||
| ) |
Constructor with time-dependent interface and shifted linear system.
Use this constructor to enable shift-invert and Cayley transformations or Hopf bifurcations. It requires another interface to compute the shifted matrix
where
is the Jacobian matrix and
is the mass matrix, and a linear system object to solve this system. Setting linSys = shiftedLinSys is a valid option for passing the shifted solver, but this will cause the shifted matrix to overwrite the Jacobian possibly resulting in more matrix fills. See declareSeparateMatrixMemory() method below to assert separate memory.
References Teuchos::rcp(), and shiftedSharedLinearSystem.
| LOCA::Epetra::Group::Group | ( | const Teuchos::RCP< LOCA::GlobalData > & | global_data, |
| Teuchos::ParameterList & | printingParams, | ||
| const Teuchos::RCP< LOCA::Epetra::Interface::TimeDependentMatrixFree > & | i, | ||
| NOX::Epetra::Vector & | initialGuess, | ||
| const Teuchos::RCP< NOX::Epetra::LinearSystem > & | linSys, | ||
| const Teuchos::RCP< NOX::Epetra::LinearSystem > & | shiftedLinSys, | ||
| const LOCA::ParameterVector & | p | ||
| ) |
Constructor with time-dependent matrix-free interface and shifted linear system.
This constructor may also be used for shift-invert and Cayley transformations, but should be only be used for a matrix-free method for solving the shifted system.
References Teuchos::rcp(), and shiftedSharedLinearSystem.
| NOX::Abstract::Group::ReturnType LOCA::Epetra::Group::applyComplexTranspose | ( | const NOX::Abstract::Vector & | input_real, |
| const NOX::Abstract::Vector & | input_imag, | ||
| NOX::Abstract::Vector & | result_real, | ||
| NOX::Abstract::Vector & | result_imag | ||
| ) | const [virtual] |
Computes conjugate-tranpose matrix vector product
.
Reimplemented from LOCA::Abstract::Group.
References NOX::Abstract::Group::BadDependency, NOX::Epetra::Vector::getEpetraVector(), and NOX::Abstract::Group::Ok.
| NOX::Abstract::Group::ReturnType LOCA::Epetra::Group::applyComplexTransposeMultiVector | ( | const NOX::Abstract::MultiVector & | input_real, |
| const NOX::Abstract::MultiVector & | input_imag, | ||
| NOX::Abstract::MultiVector & | result_real, | ||
| NOX::Abstract::MultiVector & | result_imag | ||
| ) | const [virtual] |
Computes conjugate-tranpose matrix vector product
.
Reimplemented from LOCA::Abstract::Group.
References NOX::Abstract::MultiVector::numVectors(), and NOX::Abstract::Group::Ok.
| NOX::Abstract::Group::ReturnType LOCA::Epetra::Group::applyJacobianTransposeInverse | ( | Teuchos::ParameterList & | params, |
| const NOX::Abstract::Vector & | input, | ||
| NOX::Abstract::Vector & | result | ||
| ) | const [virtual] |
Solve Jacobian-tranpose system.
In addition to all regular linear solver parameters, this method references the following additional parameters:
Implements LOCA::Abstract::TransposeSolveGroup.
References LOCA::Epetra::TransposeLinearSystem::Factory::create(), LOCA::Epetra::TransposeLinearSystem::AbstractStrategy::createJacobianTranspose(), NOX::Epetra::LinearSystem::destroyPreconditioner(), NOX::Epetra::LinearSystem::getJacobianOperator(), NOX::Abstract::Group::NotConverged, NOX::Abstract::Group::Ok, Teuchos::rcp(), and NOX::Epetra::LinearSystem::setJacobianOperatorForSolve().
| NOX::Abstract::Group::ReturnType LOCA::Epetra::Group::applyJacobianTransposeInverseMultiVector | ( | Teuchos::ParameterList & | params, |
| const NOX::Abstract::MultiVector & | input, | ||
| NOX::Abstract::MultiVector & | result | ||
| ) | const [virtual] |
Solve Jacobian-tranpose system with multiple right-hand sides.
In addition to all regular linear solver parameters, this method references the following additional parameters:
Implements LOCA::Abstract::TransposeSolveGroup.
References LOCA::Epetra::TransposeLinearSystem::Factory::create(), LOCA::Epetra::TransposeLinearSystem::AbstractStrategy::createJacobianTranspose(), NOX::Epetra::LinearSystem::destroyPreconditioner(), NOX::Epetra::LinearSystem::getJacobianOperator(), NOX::Abstract::Group::NotConverged, NOX::Abstract::MultiVector::numVectors(), NOX::Abstract::Group::Ok, Teuchos::rcp(), and NOX::Epetra::LinearSystem::setJacobianOperatorForSolve().
| NOX::Abstract::Group::ReturnType LOCA::Epetra::Group::computeComplex | ( | double | frequency | ) | [virtual] |
Compute
.
The argument frequency stores
.
Reimplemented from LOCA::Abstract::Group.
References NOX::Abstract::Group::BadDependency, NOX::Epetra::Vector::CreateView, NOX::Abstract::Group::Ok, Teuchos::rcp(), and NOX::Epetra::LinearSystem::setJacobianOperatorForSolve().
Overloaded computeF()
Calls LOCA::Epetra::Interface::setParams before evalulating F.
Reimplemented from NOX::Epetra::Group.
References NOX::Epetra::Group::computeF(), and NOX::Abstract::Group::Ok.
Overloaded computeJacobian()
Calls LOCA::Epetra::Interface::setParams before evalulating J.
Reimplemented from NOX::Epetra::Group.
References NOX::Epetra::Group::computeJacobian(), and NOX::Abstract::Group::Ok.
| double LOCA::Epetra::Group::computeScaledDotProduct | ( | const NOX::Abstract::Vector & | a, |
| const NOX::Abstract::Vector & | b | ||
| ) | const [virtual] |
Compute a scaled dot product.
The implementation here uses the scaling vector
if one is supplied:
If the scaling vector is not provided, the standard dot product is used.
Reimplemented from LOCA::MultiContinuation::AbstractGroup.
References as(), NOX::Abstract::Vector::clone(), NOX::DeepCopy, NOX::Abstract::Vector::innerProduct(), NOX::Abstract::Vector::length(), and NOX::Abstract::Vector::scale().
| void LOCA::Epetra::Group::postProcessContinuationStep | ( | LOCA::Abstract::Iterator::StepStatus | stepStatus | ) | [virtual] |
Perform any postprocessing after a continuation step finishes.
The stepStatus argument indicates whether the step was successful. The implementation here is to call the corresponding method in the interface.
Reimplemented from LOCA::MultiContinuation::AbstractGroup.
| void LOCA::Epetra::Group::preProcessContinuationStep | ( | LOCA::Abstract::Iterator::StepStatus | stepStatus | ) | [virtual] |
Perform any preprocessing before a continuation step starts.
The stepStatus argument indicates whether the previous step was successful. The implementation here is to call the corresponding method in the interface.
Reimplemented from LOCA::MultiContinuation::AbstractGroup.
| void LOCA::Epetra::Group::projectToDraw | ( | const NOX::Abstract::Vector & | x, |
| double * | px | ||
| ) | const [virtual] |
Projects solution to a few scalars for multiparameter continuation.
This method is called every time a solution is saved by the multiparameter continuation code MF for later visualization and should project the solution vector down to a few scalars. The array px will be preallocated to the proper length given by projectToDrawDimension().
The implementation here is to call the corresponding method in the interface.
Reimplemented from LOCA::MultiContinuation::AbstractGroup.
| int LOCA::Epetra::Group::projectToDrawDimension | ( | ) | const [virtual] |
Returns the dimension of the project to draw array.
The implementation here is to call the corresponding method in the interface.
Reimplemented from LOCA::MultiContinuation::AbstractGroup.
| void LOCA::Epetra::Group::scaleVector | ( | NOX::Abstract::Vector & | x | ) | const [virtual] |
Scales a vector using scaling vector.
The implementation here uses the scaling vector
if one is supplied:
If the scaling vector is not provided, the vector is rescaled by the square root of its length.
Reimplemented from LOCA::MultiContinuation::AbstractGroup.
References NOX::Abstract::Vector::length(), and NOX::Abstract::Vector::scale().
Teuchos::RCP<Epetra_Vector> LOCA::Epetra::Group::tmpVectorPtr2 [protected] |
Extra vector needed for intermediate calculations of LOCA routines.
NOTE: there already is a tmpVectorPtr in the NOX::Epetra::Group. This is a second temporary vector if that one extra isn't enough.
1.7.6.1