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Zoltan2
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00001 // @HEADER 00002 // 00003 // *********************************************************************** 00004 // 00005 // Zoltan2: A package of combinatorial algorithms for scientific computing 00006 // Copyright 2012 Sandia Corporation 00007 // 00008 // Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, 00009 // the U.S. Government retains certain rights in this software. 00010 // 00011 // Redistribution and use in source and binary forms, with or without 00012 // modification, are permitted provided that the following conditions are 00013 // met: 00014 // 00015 // 1. Redistributions of source code must retain the above copyright 00016 // notice, this list of conditions and the following disclaimer. 00017 // 00018 // 2. Redistributions in binary form must reproduce the above copyright 00019 // notice, this list of conditions and the following disclaimer in the 00020 // documentation and/or other materials provided with the distribution. 00021 // 00022 // 3. Neither the name of the Corporation nor the names of the 00023 // contributors may be used to endorse or promote products derived from 00024 // this software without specific prior written permission. 00025 // 00026 // THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY 00027 // EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00028 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 00029 // PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE 00030 // CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 00031 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 00032 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 00033 // PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 00034 // LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 00035 // NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 00036 // SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00037 // 00038 // Questions? Contact Karen Devine (kddevin@sandia.gov) 00039 // Erik Boman (egboman@sandia.gov) 00040 // Siva Rajamanickam (srajama@sandia.gov) 00041 // 00042 // *********************************************************************** 00043 // 00044 // @HEADER 00045 #ifndef _ZOLTAN2_ALGWOLF_HPP_ 00046 #define _ZOLTAN2_ALGWOLF_HPP_ 00047 00048 #include <Zoltan2_IdentifierModel.hpp> 00049 #include <Zoltan2_PartitioningSolution.hpp> 00050 #include <Zoltan2_Algorithm.hpp> 00051 #include <Zoltan2_AlgRCB.hpp> 00052 00053 #include <sstream> 00054 #include <string> 00055 #include <bitset> 00056 00061 namespace Zoltan2 00062 { 00063 00064 // /*! \brief The boolean parameters of interest to the Block algorithm. 00065 // */ 00066 // enum blockParams{ 00067 // block_balanceCount, /*!< objective = balance_object_count */ 00068 // block_balanceWeight, /*!< objective = balance_object_weight */ 00069 // block_minTotalWeight, /*!< objective = mc_minimize_total_weight */ 00070 // block_minMaximumWeight, /*!< objective = mc_minimize_maximum_weight */ 00071 // block_balanceTotalMaximum, /*!< objective = mc_balance_total_maximum */ 00072 // NUM_BLOCK_PARAMS 00073 // }; 00074 00076 00087 00088 template <typename Adapter> 00089 class AlgWolf : public Algorithm<Adapter> 00090 { 00091 00092 private: 00093 const RCP<const Environment> mEnv; 00094 const RCP<Comm<int> > mProblemComm; 00095 00096 const RCP<const GraphModel<typename Adapter::base_adapter_t> > &mGraphModel; 00097 const RCP<const CoordinateModel<typename Adapter::base_adapter_t> > mIds; 00098 00099 RCP<PartitioningSolution<Adapter> > mSolution; //Not sure if this should be saved 00100 00101 public: 00102 // Constructor 00103 AlgWolf(const RCP<const Environment> &env_, 00104 const RCP<Comm<int> > &problemComm_, 00105 const RCP<const GraphModel<typename Adapter::base_adapter_t> > &gModel_, 00106 const RCP<const CoordinateModel<typename Adapter::base_adapter_t> > &cModel_) 00107 :mEnv(env_), mProblemComm(problemComm_), mGraphModel(gModel_), mIds(cModel_) 00108 { 00109 #ifndef INCLUDE_ZOLTAN2_EXPERIMENTAL 00110 Z2_THROW_EXPERIMENTAL("Zoltan2 Wolf is strictly experimental software ") 00111 #endif 00112 00113 #ifndef INCLUDE_ZOLTAN2_EXPERIMENTAL_WOLF 00114 Z2_THROW_EXPERIMENTAL_WOLF("Zoltan2 Wolf is strictly experimental software ") 00115 #endif 00116 00117 } 00118 00119 // Partitioning method 00120 void partition(const RCP<PartitioningSolution<Adapter> > &solution_); 00121 00122 }; 00124 00127 template <typename Adapter> 00128 void AlgWolf<Adapter>::partition( 00129 const RCP<PartitioningSolution<Adapter> > &solution_ 00130 ) 00131 { 00132 // using std::string; 00133 // using std::ostringstream; 00134 00135 // typedef typename Adapter::lno_t lno_t; // local ids 00136 // typedef typename Adapter::gno_t gno_t; // global ids 00137 // typedef typename Adapter::scalar_t scalar_t; // scalars 00138 00139 mEnv->debug(DETAILED_STATUS, std::string("Entering AlgWolf")); 00140 00141 // int rank = env->myRank_; 00142 // int nprocs = env->numProcs_; 00143 00144 // //////////////////////////////////////////////////////// 00145 // // From the CoordinateModel we need: 00146 // // the number of gnos 00147 // // number of weights per gno 00148 // // the weights 00149 00150 // size_t numGnos = ids->getLocalNumIdentifiers(); 00151 00152 // ArrayView<const gno_t> idList; 00153 // typedef StridedData<lno_t, scalar_t> input_t; 00154 // ArrayView<input_t> wgtList; 00155 00156 // ids->getIdentifierList(idList, wgtList); 00157 00158 // // If user supplied no weights, we use uniform weights. 00159 // bool uniformWeights = (wgtList.size() == 0); 00160 00161 00162 00163 00164 // First, let's partition with RCB 00165 00166 // Q: can I use solution passed into alg or do I need to create a different one? 00167 // For now using the one passed into alg 00168 00169 { 00170 AlgRCB<Adapter> algrcb(this->mEnv, mProblemComm, this->mIds); 00171 algrcb.partition(solution_); 00172 } 00173 00174 00175 // //////////////////////////////////////////////////////// 00176 // // Partitioning problem parameters of interest: 00177 // // objective 00178 // // imbalance_tolerance 00179 00180 // const Teuchos::ParameterList &pl = env->getParameters(); 00181 // const Teuchos::ParameterEntry *pe; 00182 00183 // pe = pl.getEntryPtr("partitioning_objective"); 00184 // if (pe) { 00185 // string po = pe->getValue<string>(&po); 00186 // if (po == string("balance_object_count")) 00187 // uniformWeights = true; // User requests that we ignore weights 00188 // } 00189 00190 // double imbalanceTolerance=1.1; 00191 // pe = pl.getEntryPtr("imbalance_tolerance"); 00192 // if (pe) imbalanceTolerance = pe->getValue<double>(&imbalanceTolerance); 00193 00194 // //////////////////////////////////////////////////////// 00195 // // From the Solution we get part information: 00196 // // number of parts and part sizes 00197 00198 // size_t numGlobalParts = solution->getTargetGlobalNumberOfParts(); 00199 00200 // Array<scalar_t> part_sizes(numGlobalParts); 00201 00202 // if (solution->criteriaHasUniformPartSizes(0)) 00203 // for (unsigned int i=0; i<numGlobalParts; i++) 00204 // part_sizes[i] = 1.0 / numGlobalParts; 00205 // else 00206 // for (unsigned int i=0; i<numGlobalParts; i++) 00207 // part_sizes[i] = solution->getCriteriaPartSize(0, i); 00208 00209 // for (unsigned int i=1; i<numGlobalParts; i++) 00210 // part_sizes[i] += part_sizes[i-1]; 00211 00212 // // TODO assertion that last part sizes is about equal to 1.0 00213 00214 00215 // //////////////////////////////////////////////////////// 00216 // // The algorithm 00217 // // 00218 // // Wolf partitioning algorithm lifted from zoltan/src/simple/block.c 00219 // // The solution is: 00220 // // a list of part numbers in gno order 00221 // // an imbalance for each weight 00222 00223 // scalar_t wtsum(0); 00224 00225 // if (!uniformWeights) { 00226 // for (size_t i=0; i<numGnos; i++) 00227 // wtsum += wgtList[0][i]; // [] operator knows stride 00228 // } 00229 // else 00230 // wtsum = static_cast<scalar_t>(numGnos); 00231 00232 // Array<scalar_t> scansum(nprocs+1, 0); 00233 00234 // Teuchos::gatherAll<int, scalar_t>(*problemComm, 1, &wtsum, nprocs, 00235 // scansum.getRawPtr()+1); 00236 00237 // /* scansum = sum of weights on lower processors, excluding self. */ 00238 00239 // for (int i=2; i<=nprocs; i++) 00240 // scansum[i] += scansum[i-1]; 00241 00242 // scalar_t globalTotalWeight = scansum[nprocs]; 00243 00244 // if (env->getDebugLevel() >= VERBOSE_DETAILED_STATUS) { 00245 // ostringstream oss("Part sizes: "); 00246 // for (unsigned int i=0; i < numGlobalParts; i++) 00247 // oss << part_sizes[i] << " "; 00248 // oss << std::endl << std::endl << "Weights : "; 00249 // for (int i=0; i <= nprocs; i++) 00250 // oss << scansum[i] << " "; 00251 // oss << std::endl; 00252 // env->debug(VERBOSE_DETAILED_STATUS, oss.str()); 00253 // } 00254 00255 // /* Loop over objects and assign part. */ 00256 // partId_t part = 0; 00257 // wtsum = scansum[rank]; 00258 // Array<scalar_t> partTotal(numGlobalParts, 0); 00259 // ArrayRCP<partId_t> gnoPart= arcp(new partId_t [numGnos], 0, numGnos); 00260 00261 // env->memory("Wolf algorithm memory"); 00262 00263 // for (size_t i=0; i<numGnos; i++){ 00264 // scalar_t gnoWeight = (uniformWeights ? 1.0 : wgtList[0][i]); 00265 // /* wtsum is now sum of all lower-ordered object */ 00266 // /* determine new part number for this object, 00267 // using the "center of gravity" */ 00268 // while (unsigned(part)<numGlobalParts-1 && 00269 // (wtsum+0.5*gnoWeight) > part_sizes[part]*globalTotalWeight) 00270 // part++; 00271 // gnoPart[i] = part; 00272 // partTotal[part] += gnoWeight; 00273 // wtsum += gnoWeight; 00274 // } 00275 00276 // //////////////////////////////////////////////////////////// 00277 // // Done 00278 00279 // ArrayRCP<const gno_t> gnos = arcpFromArrayView(idList); 00280 // solution->setParts(gnos, gnoPart, true); 00281 00282 mEnv->debug(DETAILED_STATUS, std::string("Exiting AlgWolf")); 00283 } 00284 00285 00286 00287 00288 00289 00290 } // namespace Zoltan2 00291 00292 #endif
1.7.6.1