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Zoltan2
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00001 // @HEADER 00002 // 00003 // *********************************************************************** 00004 // 00005 // Zoltan2: A package of combinatorial algorithms for scientific computing 00006 // Copyright 2012 Sandia Corporation 00007 // 00008 // Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, 00009 // the U.S. Government retains certain rights in this software. 00010 // 00011 // Redistribution and use in source and binary forms, with or without 00012 // modification, are permitted provided that the following conditions are 00013 // met: 00014 // 00015 // 1. Redistributions of source code must retain the above copyright 00016 // notice, this list of conditions and the following disclaimer. 00017 // 00018 // 2. Redistributions in binary form must reproduce the above copyright 00019 // notice, this list of conditions and the following disclaimer in the 00020 // documentation and/or other materials provided with the distribution. 00021 // 00022 // 3. Neither the name of the Corporation nor the names of the 00023 // contributors may be used to endorse or promote products derived from 00024 // this software without specific prior written permission. 00025 // 00026 // THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY 00027 // EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00028 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 00029 // PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE 00030 // CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 00031 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 00032 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 00033 // PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF 00034 // LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 00035 // NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 00036 // SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00037 // 00038 // Questions? Contact Karen Devine (kddevin@sandia.gov) 00039 // Erik Boman (egboman@sandia.gov) 00040 // Siva Rajamanickam (srajama@sandia.gov) 00041 // 00042 // *********************************************************************** 00043 // 00044 // @HEADER 00045 00050 #include <Zoltan2_PartitioningSolution.hpp> 00051 #include <Zoltan2_PartitioningProblem.hpp> 00052 #include <Zoltan2_BasicVectorAdapter.hpp> 00053 #include <Zoltan2_InputTraits.hpp> 00054 #include <vector> 00055 #include <cstdlib> 00056 00057 using namespace std; 00058 using std::vector; 00059 00064 // Zoltan2 is templated. What data types will we use for 00065 // scalars (coordinate values and weights), for local ids, and 00066 // for global ids? 00067 // 00068 // If Zoltan2 was compiled with explicit instantiation, we will 00069 // use the library's data types. These macros are defined 00070 // in Zoltan2_config.h. 00071 00072 #ifdef HAVE_ZOLTAN2_INST_FLOAT_INT_LONG 00073 typedef float scalar_t; 00074 typedef int localId_t; 00075 typedef long globalId_t; 00076 #else 00077 #ifdef HAVE_ZOLTAN2_INST_DOUBLE_INT_LONG 00078 typedef double scalar_t; 00079 typedef int localId_t; 00080 typedef long globalId_t; 00081 #else 00082 #ifdef HAVE_ZOLTAN2_INST_FLOAT_INT_INT 00083 typedef float scalar_t; 00084 typedef int localId_t; 00085 typedef int globalId_t; 00086 #else 00087 #ifdef HAVE_ZOLTAN2_INST_DOUBLE_INT_INT 00088 typedef double scalar_t; 00089 typedef int localId_t; 00090 typedef int globalId_t; 00091 #else 00092 typedef float scalar_t; 00093 typedef int localId_t; 00094 typedef int globalId_t; 00095 #endif 00096 #endif 00097 #endif 00098 #endif 00099 00100 00101 int main(int argc, char *argv[]) 00102 { 00103 #ifdef HAVE_ZOLTAN2_MPI 00104 MPI_Init(&argc, &argv); 00105 int rank, nprocs; 00106 MPI_Comm_size(MPI_COMM_WORLD, &nprocs); 00107 MPI_Comm_rank(MPI_COMM_WORLD, &rank); 00108 #else 00109 int rank=0, nprocs=1; 00110 #endif 00111 00112 // TODO explain 00113 typedef Zoltan2::BasicUserTypes<scalar_t, globalId_t, localId_t, globalId_t> myTypes; 00114 00115 // TODO explain 00116 typedef Zoltan2::BasicVectorAdapter<myTypes> inputAdapter_t; 00117 typedef inputAdapter_t::part_t part_t; 00118 00120 // Create input data. 00121 00122 size_t localCount = 40; 00123 int dim = 3; 00124 00125 scalar_t *coords = new scalar_t [dim * localCount]; 00126 00127 scalar_t *x = coords; 00128 scalar_t *y = x + localCount; 00129 scalar_t *z = y + localCount; 00130 00131 // Create coordinates that range from 0 to 10.0 00132 00133 srand(rank); 00134 scalar_t scalingFactor = 10.0 / RAND_MAX; 00135 00136 for (size_t i=0; i < localCount*dim; i++){ 00137 coords[i] = scalar_t(rand()) * scalingFactor; 00138 } 00139 00140 // Create global ids for the coordinates. 00141 00142 globalId_t *globalIds = new globalId_t [localCount]; 00143 globalId_t offset = rank * localCount; 00144 00145 for (size_t i=0; i < localCount; i++) 00146 globalIds[i] = offset++; 00147 00149 // Create parameters for an RCB problem 00150 00151 double tolerance = 1.1; 00152 00153 if (rank == 0) 00154 std::cout << "Imbalance tolerance is " << tolerance << std::endl; 00155 00156 Teuchos::ParameterList params("test params"); 00157 params.set("debug_level", "basic_status"); 00158 params.set("debug_procs", "0"); 00159 params.set("error_check_level", "debug_mode_assertions"); 00160 00161 params.set("compute_metrics", "true"); 00162 params.set("algorithm", "rcb"); 00163 params.set("imbalance_tolerance", tolerance ); 00164 params.set("num_global_parts", nprocs); 00165 00166 params.set("bisection_num_test_cuts", 1); 00167 00170 // A simple problem with no weights. 00173 00174 // Create a Zoltan2 input adapter for this geometry. TODO explain 00175 00176 inputAdapter_t ia1(localCount, globalIds, x, y, z, 1, 1, 1); 00177 00178 // Create a Zoltan2 partitioning problem 00179 00180 #ifdef HAVE_ZOLTAN2_MPI 00181 Zoltan2::PartitioningProblem<inputAdapter_t> *problem1 = 00182 new Zoltan2::PartitioningProblem<inputAdapter_t>(&ia1, ¶ms, 00183 MPI_COMM_WORLD); 00184 #else 00185 Zoltan2::PartitioningProblem<inputAdapter_t> *problem1 = 00186 new Zoltan2::PartitioningProblem<inputAdapter_t>(&ia1, ¶ms); 00187 #endif 00188 00189 // Solve the problem 00190 00191 problem1->solve(); 00192 00193 // Check the solution. 00194 00195 if (rank == 0) 00196 problem1->printMetrics(cout); 00197 00198 if (rank == 0){ 00199 scalar_t imb = problem1->getWeightImbalance(); 00200 if (imb <= tolerance) 00201 std::cout << "pass: " << imb << std::endl; 00202 else 00203 std::cout << "fail: " << imb << std::endl; 00204 std::cout << std::endl; 00205 } 00206 00209 // Try a problem with weights 00212 00213 scalar_t *weights = new scalar_t [localCount]; 00214 for (size_t i=0; i < localCount; i++){ 00215 weights[i] = 1.0 + scalar_t(rank) / scalar_t(nprocs); 00216 } 00217 00218 // Create a Zoltan2 input adapter that includes weights. 00219 00220 vector<const scalar_t *>coordVec(2); 00221 vector<int> coordStrides(2); 00222 00223 coordVec[0] = x; coordStrides[0] = 1; 00224 coordVec[1] = y; coordStrides[1] = 1; 00225 00226 vector<const scalar_t *>weightVec(1); 00227 vector<int> weightStrides(1); 00228 00229 weightVec[0] = weights; weightStrides[0] = 1; 00230 00231 inputAdapter_t ia2( 00232 localCount, globalIds, 00233 coordVec, coordStrides, 00234 weightVec, weightStrides); 00235 00236 // Create a Zoltan2 partitioning problem 00237 00238 #ifdef HAVE_ZOLTAN2_MPI 00239 Zoltan2::PartitioningProblem<inputAdapter_t> *problem2 = 00240 new Zoltan2::PartitioningProblem<inputAdapter_t>(&ia2, ¶ms, 00241 MPI_COMM_WORLD); 00242 #else 00243 Zoltan2::PartitioningProblem<inputAdapter_t> *problem2 = 00244 new Zoltan2::PartitioningProblem<inputAdapter_t>(&ia2, ¶ms); 00245 #endif 00246 00247 // Solve the problem 00248 00249 problem2->solve(); 00250 00251 // Check the solution. 00252 00253 if (rank == 0) 00254 problem2->printMetrics(cout); 00255 00256 if (rank == 0){ 00257 scalar_t imb = problem2->getWeightImbalance(); 00258 if (imb <= tolerance) 00259 std::cout << "pass: " << imb << std::endl; 00260 else 00261 std::cout << "fail: " << imb << std::endl; 00262 std::cout << std::endl; 00263 } 00264 00265 if (localCount > 0){ 00266 delete [] weights; 00267 weights = NULL; 00268 } 00269 00272 // Try a problem with multiple weights. 00275 00276 // Add to the parameters the multicriteria objective. 00277 00278 params.set("partitioning_objective", "multicriteria_minimize_total_weight"); 00279 00280 // Create the new weights. 00281 00282 weights = new scalar_t [localCount*3]; 00283 srand(rank); 00284 00285 for (size_t i=0; i < localCount*3; i+=3){ 00286 weights[i] = 1.0 + rank / nprocs; // weight idx 1 00287 weights[i+1] = rank<nprocs/2 ? 1 : 2; // weight idx 2 00288 weights[i+2] = rand()/RAND_MAX +.5; // weight idx 3 00289 } 00290 00291 // Create a Zoltan2 input adapter with these weights. 00292 00293 weightVec.resize(3); 00294 weightStrides.resize(3); 00295 00296 weightVec[0] = weights; weightStrides[0] = 3; 00297 weightVec[1] = weights+1; weightStrides[1] = 3; 00298 weightVec[2] = weights+2; weightStrides[2] = 3; 00299 00300 inputAdapter_t ia3( 00301 localCount, globalIds, 00302 coordVec, coordStrides, 00303 weightVec, weightStrides); 00304 00305 // Create a Zoltan2 partitioning problem. 00306 00307 #ifdef HAVE_ZOLTAN2_MPI 00308 Zoltan2::PartitioningProblem<inputAdapter_t> *problem3 = 00309 new Zoltan2::PartitioningProblem<inputAdapter_t>(&ia3, ¶ms, 00310 MPI_COMM_WORLD); 00311 #else 00312 Zoltan2::PartitioningProblem<inputAdapter_t> *problem3 = 00313 new Zoltan2::PartitioningProblem<inputAdapter_t>(&ia3, ¶ms); 00314 #endif 00315 00316 // Solve the problem 00317 00318 problem3->solve(); 00319 00320 // Check the solution. 00321 00322 if (rank == 0) 00323 problem3->printMetrics(cout); 00324 00325 if (rank == 0){ 00326 scalar_t imb = problem3->getWeightImbalance(); 00327 if (imb <= tolerance) 00328 std::cout << "pass: " << imb << std::endl; 00329 else 00330 std::cout << "fail: " << imb << std::endl; 00331 std::cout << std::endl; 00332 } 00333 00335 // Try the other multicriteria objectives. 00336 00337 bool dataHasChanged = false; // default is true 00338 00339 params.set("partitioning_objective", "multicriteria_minimize_maximum_weight"); 00340 problem3->resetParameters(¶ms); 00341 problem3->solve(dataHasChanged); 00342 if (rank == 0){ 00343 problem3->printMetrics(cout); 00344 scalar_t imb = problem3->getWeightImbalance(); 00345 if (imb <= tolerance) 00346 std::cout << "pass: " << imb << std::endl; 00347 else 00348 std::cout << "fail: " << imb << std::endl; 00349 std::cout << std::endl; 00350 } 00351 00352 params.set("partitioning_objective", "multicriteria_balance_total_maximum"); 00353 problem3->resetParameters(¶ms); 00354 problem3->solve(dataHasChanged); 00355 if (rank == 0){ 00356 problem3->printMetrics(cout); 00357 scalar_t imb = problem3->getWeightImbalance(); 00358 if (imb <= tolerance) 00359 std::cout << "pass: " << imb << std::endl; 00360 else 00361 std::cout << "fail: " << imb << std::endl; 00362 std::cout << std::endl; 00363 } 00364 00365 if (localCount > 0){ 00366 delete [] weights; 00367 weights = NULL; 00368 } 00369 00372 // Using part sizes, ask for some parts to be empty. 00375 00376 // Change the number of parts to twice the number of processes to 00377 // ensure that we have more than one global part. 00378 00379 params.set("num_global_parts", nprocs*2); 00380 00381 // Using the initial problem that did not have any weights, reset 00382 // parameter list, and give it some part sizes. 00383 00384 problem1->resetParameters(¶ms); 00385 00386 part_t partIds[2]; 00387 scalar_t partSizes[2]; 00388 00389 partIds[0] = rank*2; partSizes[0] = 0; 00390 partIds[1] = rank*2+1; partSizes[1] = 1; 00391 00392 problem1->setPartSizes(2, partIds, partSizes); 00393 00394 // Solve the problem. The argument "dataHasChanged" indicates 00395 // that we have not changed the input data, which allows the problem 00396 // so skip some work when re-solving. 00397 00398 dataHasChanged = false; 00399 00400 problem1->solve(dataHasChanged); 00401 00402 // Obtain the solution 00403 00404 const Zoltan2::PartitioningSolution<inputAdapter_t> &solution4 = 00405 problem1->getSolution(); 00406 00407 // Check it. Part sizes should all be odd. 00408 00409 const part_t *partAssignments = solution4.getPartList(); 00410 00411 int numInEmptyParts = 0; 00412 for (size_t i=0; i < localCount; i++){ 00413 if (partAssignments[i] % 2 == 0) 00414 numInEmptyParts++; 00415 } 00416 00417 if (rank == 0) 00418 std::cout << "Request that " << nprocs << " parts be empty." <<std::endl; 00419 00420 // Check the solution. 00421 00422 if (rank == 0) 00423 problem1->printMetrics(cout); 00424 00425 if (rank == 0){ 00426 scalar_t imb = problem1->getWeightImbalance(); 00427 if (imb <= tolerance) 00428 std::cout << "pass: " << imb << std::endl; 00429 else 00430 std::cout << "fail: " << imb << std::endl; 00431 std::cout << std::endl; 00432 } 00433 00434 if (coords) 00435 delete [] coords; 00436 00437 if (globalIds) 00438 delete [] globalIds; 00439 00440 delete problem1; 00441 delete problem2; 00442 delete problem3; 00443 00444 #ifdef HAVE_ZOLTAN2_MPI 00445 MPI_Finalize(); 00446 #endif 00447 00448 if (rank == 0) 00449 std::cout << "PASS" << std::endl; 00450 } 00451
1.7.6.1